More than 120,000 people have been displaced, Kenyan government says, with 22 others injured and eight reported missing.
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More than 200,000 people and 51,000 households have been affected by the rains, Tanzania’s prime minister said.
A study has found climate change caused by fossil fuel emissions is the likely reason for the extreme weather events.
East Africa has been lashed by relentless downpours in recent weeks, as El Nino exacerbates the seasonal rainfall.